Table 1 Some basic statistics for the datasets used in the experiments, for \(k=31\), such as: number of distinct \(k\)-mers (n), number of distinct weights (\(|\mathcal {D}|\)), largest weight (max), expected weight value (E), and empirical entropy of the weights (\(H_0(W)\))
Dataset | n | \({|\mathcal {D}|}\) | \({\lceil \log _{2}|\mathcal {D}|\rceil }\) | \({max }\) | \({\lceil \log _{2}max \rceil }\) | E | \({H_{0}(W)}\) |
|---|---|---|---|---|---|---|---|
E-Coli | 5,235,781 | 22 | 5 | 27 | 5 | 1.05 | 0.206 |
S-Enterica-100 | 12,408,741 | 620 | 10 | 7956 | 13 | 38.94 | 4.155 |
Human-Chr-13 | 90,911,778 | 806 | 10 | 6354 | 13 | 1.08 | 0.160 |
C-Elegans | 94,006,897 | 398 | 9 | 3478 | 12 | 1.07 | 0.223 |