From: Eulertigs: minimum plain text representation of k-mer sets without repetitions in linear time
Genome | Algorithm | CL ratio | SC ratio | Time [s] | Memory [GiB] | ||
---|---|---|---|---|---|---|---|
C. elegans (reads) | Unitigs | 1.789 | 2.831 | 1963 | Â | 5.96 | Â |
UST | 1.035 | 1.080 | 2815 | (1.43) | 15.2 | (2.54) | |
Eulertigs | 1 | 1 | 2741 | (1.40) | 24.9 | (4.18) | |
B. mori (reads) | Unitigs | 1.912 | 3.136 | 6844 | Â | 9.35 | Â |
UST | 1.050 | 1.118 | 10053 | (1.47) | 52.4 | (5.60) | |
Eulertigs | 1 | 1 | 9412 | (1.38) | 78.4 | (8.38) | |
H. sapiens (reads) | Unitigs | 1.418 | 2.143 | 55007 | Â | 13.0 | Â |
UST | 1.016 | 1.044 | 55772 | (1.01) | 16.4 | (1.26) | |
Eulertigs | 1 | 1 | 55856 | (1.02) | 26.5 | (2.05) | |
C. elegans | Unitigs | 1.060 | 3.154 | 53.3 | Â | 1.22 | Â |
UST | 1.002 | 1.089 | 57.1 | (1.07) | 1.22 | (1.00) | |
Eulertigs | 1 | 1 | 62.5 | (1.17) | 1.22 | (1.00) | |
B. mori | Unitigs | 1.262 | 3.310 | 244 | Â | 3.32 | Â |
UST | 1.018 | 1.156 | 281 | (1.15) | 3.32 | (1.00) | |
Eulertigs | 1 | 1 | 295 | (1.21) | 3.32 | (1.00) | |
H. sapiens | Unitigs | 1.195 | 3.532 | 1788 | Â | 10.0 | Â |
UST | 1.015 | 1.192 | 2020 | (1.13) | 10.0 | (1.00) | |
Eulertigs | 1 | 1 | 2127 | (1.19) | 10.0 | (1.00) |