Table 3 Experiments on references and read sets of single genomes with k = 52 and a min abundance of 10 for human and 1 for the others
From: Eulertigs: minimum plain text representation of k-mer sets without repetitions in linear time
Genome | Algorithm | CL ratio | SC ratio | Time [s] | Memory [GiB] | ||
|---|---|---|---|---|---|---|---|
C. elegans (reads) | Unitigs | 1.788 | 2.824 | 2278 | Â | 5.94 | Â |
UST | 1.034 | 1.079 | 3164 | (1.39) | 15.0 | (2.53) | |
Eulertigs | 1 | 1 | 3101 | (1.36) | 24.8 | (4.17) | |
B. mori (reads) | Unitigs | 1.911 | 3.133 | 7157 | Â | 9.35 | Â |
UST | 1.050 | 1.117 | 10530 | (1.47) | 52.3 | (5.59) | |
Eulertigs | 1 | 1 | 10006 | (1.40) | 78.3 | (8.38) | |
H. sapiens (reads) | Unitigs | 1.414 | 2.135 | 56418 | Â | 12.0 | Â |
UST | 1.016 | 1.043 | 57174 | (1.01) | 16.1 | (1.35) | |
Eulertigs | 1 | 1 | 57252 | (1.01) | 25.9 | (2.17) | |
C. elegans | Unitigs | 1.059 | 3.145 | 72.9 | Â | 1.22 | Â |
UST | 1.002 | 1.088 | 76.2 | (1.05) | 1.22 | (1.00) | |
Eulertigs | 1 | 1 | 82.0 | (1.13) | 1.22 | (1.00) | |
B. mori | Unitigs | 1.259 | 3.296 | 259 | Â | 3.33 | Â |
UST | 1.017 | 1.153 | 295 | (1.14) | 3.33 | (1.00) | |
Eulertigs | 1 | 1 | 311 | (1.20) | 3.33 | (1.00) | |
H. sapiens | Unitigs | 1.190 | 3.521 | 1509 | Â | 10.0 | Â |
UST | 1.014 | 1.190 | 1708 | (1.13) | 10.0 | (1.00) | |
Eulertigs | 1 | 1 | 1845 | (1.22) | 10.0 | (1.00) | |