From: Eulertigs: minimum plain text representation of k-mer sets without repetitions in linear time
Genome | Algorithm | CL ratio | SC ratio | Time [s] | Memory [GiB] | ||
---|---|---|---|---|---|---|---|
C. elegans (reads) | Unitigs | 1.742 | 2.588 | 5585 | Â | 5.91 | Â |
UST | 1.023 | 1.049 | 6292 | (1.13) | 11.8 | (2.00) | |
Eulertigs | 1 | 1 | 6565 | (1.18) | 21.6 | (3.66) | |
B. mori (reads) | Unitigs | 1.891 | 3.003 | 34979 | Â | 10.8 | Â |
UST | 1.042 | 1.093 | 38272 | (1.09) | 47.1 | (4.36) | |
Eulertigs | 1 | 1 | 38939 | (1.11) | 77.3 | (7.17) | |
H. sapiens (reads) | Unitigs | 1.334 | 1.927 | 191808 | Â | 9.15 | Â |
UST | 1.008 | 1.021 | 192219 | (1.00) | 10.8 | (1.18) | |
Eulertigs | 1 | 1 | 192464 | (1.00) | 13.8 | (1.50) | |
C. elegans | Unitigs | 1.042 | 3.061 | 176 | Â | 2.14 | Â |
UST | 1.001 | 1.063 | 179 | (1.01) | 2.14 | (1.00) | |
Eulertigs | 1 | 1 | 186 | (1.05) | 2.14 | (1.00) | |
B. mori | Unitigs | 1.133 | 2.805 | 756 | Â | 3.15 | Â |
UST | 1.005 | 1.071 | 771 | (1.02) | 3.15 | (1.00) | |
Eulertigs | 1 | 1 | 801 | (1.06) | 3.15 | (1.00) | |
H. sapiens | Unitigs | 1.060 | 3.189 | 5204 | Â | 17.4 | Â |
UST | 1.003 | 1.101 | 5277 | (1.01) | 17.4 | (1.00) | |
Eulertigs | 1 | 1 | 5474 | (1.05) | 17.4 | (1.00) |