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Fig. 3 | Algorithms for Molecular Biology

Fig. 3

From: On the complexity of non-binary tree reconciliation with endosymbiotic gene transfer

Fig. 3

(1) A species tree S on \(\Sigma = \{A,B,C\}\); (2) A binary gene tree G where leaves are identified by a species mapping s, and a b-Constraint (MI) where \(I= r(G)\); (3) An optimal DL-Reconciliation of G with S; (4) The tree G accompanied with the arrays computed by Algorithm 6 (we consider here the costs \(\delta = \lambda = 1\) and \(\rho = \tau = 2\)) and the pointers for an optimal solution; (5) The optimal DLE-Reconciliation \({\mathcal {R}}_{DLE}(G,S)\) of \(\langle G,s_L,b_L\rangle\) (where \(b_L\) is consistent with (MI)) returned by Algorithm 5. The cost \(minCostTransfer({\mathcal {R}}_{DLE}(G,S))\) is 3. Events are represented as in Fig. 1

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