Table 3 Timing results for executing GP and VBPI given a set of trees to build the subsplit DAG. GP runtimes are averages over 10 replicates of DAG initialization and branch length estimation
From: A topology-marginal composite likelihood via a generalized phylogenetic pruning algorithm
Dataset | DAG initialization (s) | GP estimation runtime (s) | VBPI runtime (s) |
|---|---|---|---|
DS1 | 0.58 | 1.72 | 11, 336 |
DS3 | 0.19 | 0.38 | 15, 273 |
DS4 | 1.29 | 1.81 | 16, 867 |
DS5 | 62.11 | 4.90 | 19, 648 |
DS6 | 40.05 | 2.64 | 20, 420 |
DS7 | 1.72 | 0.67 | 25, 587 |
DS8 | 6.81 | 1.04 | 25, 725 |