Table 3 The functional categories for the gene clusters described in Tables 2, based on their COG annotations
From: New algorithms for structure informed genome rearrangement
# | Gene Cluster ID | Functional category |
|---|---|---|
1 | 19876 | Carbohydrate transport and metabolism—transcription |
2 | 21344 | Signal transduction mechanisms—cell wall/membrane/envelope biogenesis—defense mechanisms |
3 | 19877 | Carbohydrate transport and metabolism—general function prediction only |
4 | 27180 | Carbohydrate transport and metabolism—transcription |
5 | 14602 | Inorganic ion transport and metabolism |
6 | 23340 | Transcription—inorganic ion transport and metabolism |
7 | 19853 | Transcription—carbohydrate transport and metabolism |
8 | 14790 | Amino acid transport and metabolism—lipid transport and metabolism |
9 | 26244 | Carbohydrate transport and metabolism |
10 | 26243 | Carbohydrate transport and metabolism—transcription |
11 | 26476 | Inorganic ion transport and metabolism |
12 | 15297 | Energy production and conversion—coenzyme transport and metabolism |
13 | 22866 | Signal transduction mechanisms—cell wall/membrane/envelope biogenesis |
14 | 26238 | Carbohydrate transport and metabolism—transcription |
15 | 18995 | Carbohydrate transport and metabolism—transcription |
16 | 28119 | Carbohydrate transport and metabolism |
17 | 25371 | Coenzyme transport and metabolism—amino acid transport and metabolism |
18 | 26231 | Carbohydrate transport and metabolism |
19 | 14796 | Amino acid transport and metabolism |
20 | 20007 | Amino acid transport and metabolism |
21 | 22299 | Lipid transport and metabolism |
22 | 19255 | Posttranslational modification, protein turnover, chaperones—amino acid transport and metabolism |
23 | 20764 | Carbohydrate transport and metabolism |
24 | 21553 | Carbohydrate transport and metabolism |
25 | 27851 | Cell wall/membrane/envelope biogenesis—inorganic ion transport and metabolism |
26 | 27427 | Transcription—inorganic ion transport and metabolism |
27 | 15467 | Energy production and conversion |
28 | 19610 | Lipid transport and metabolism—general function prediction only |
29 | 20078 | Cell wall/membrane/envelope biogenesis—general function prediction only |
30 | 22181 | Energy production and conversion—posttranslational modification, protein turnover, chaperones |
31 | 25612 | Amino acid transport and metabolism |
32 | 27177 | Carbohydrate transport and metabolism |
33 | 8962 | Signal transduction mechanisms—inorganic ion transport and metabolism |
34 | 27530 | Energy production and conversion—transcription |
35 | 19256 | Amino acid transport and metabolism |
36 | 21317 | General function prediction only—posttranslational modification, protein turnover, chaperones |
37 | 19852 | Carbohydrate transport and metabolism |
38 | 27250 | Energy production and conversion |
39 | 30976 | Transcription—cell wall/membrane/envelope biogenesis —secondary metabolites biosynthesis, transport and catabolism |
40 | 28245 | Coenzyme transport and metabolism—carbohydrate transport and metabolism |
41 | 26257 | Carbohydrate transport and metabolism |
42 | 14839 | Amino acid transport and metabolism |
43 | 27207 | Cell wall/membrane/envelope biogenesis—defense mechanisms—transcription |
44 | 12685 | Posttranslational modification, protein turnover, chaperones—general function prediction only |
45 | 21268 | Defense mechanisms—signal transduction mechanisms |
46 | 23083 | Carbohydrate transport and metabolism—general function prediction only |
47 | 25597 | Amino acid transport and metabolism—posttranslational modification, protein turnover, chaperones |