Table 10 Maximum resident set size (MB) for different subset sizes of SARS-CoV2 genomes (serial implementations)
Sze (MB) | saca- mats | lib sais | big -bwt | divsuf sort | gsacak | DS1 | DS2 | DS3 | DSH | sais -lite | lfg saca |
|---|---|---|---|---|---|---|---|---|---|---|---|
250 | 2258 | 1224 | 1007 | 1224 | 2200 | 3455 | 2622 | 2334 | 3455 | 1224 | 3444 |
500 | 4454 | 2445 | 2024 | 2445 | 4398 | 6880 | 5233 | 4661 | 6880 | 2444 | 6879 |
750 | 6655 | 3666 | 3179 | 3665 | 6595 | 10,267 | 7832 | 6989 | 10,267 | 3665 | 10,306 |
1000 | 8871 | 4886 | 4201 | 4886 | 8792 | 13,711 | 10,449 | 9319 | 13,711 | 4886 | 13,745 |
2000 | 17,739 | 9769 | 8252 | 9769 | 17,581 | 27,476 | 20,909 | 18,634 | 27,475 | 9769 | 27,499 |
4000 | 35,446 | 35,160 | 32,335 | 35,160 | 50,784 | – | – | – | – | – | – |
6000 | 53,162 | 52,738 | 48,328 | 52,738 | – | – | – | – | – | – | – |