Table 12 Maximum resident set size (MB) for different subset sizes of SARS-CoV2 genomes (parallel implementations)
Size (MB) | Sacamats-par | Libsais-par | Big-bwt-par | DS1-par | DS2-par | DS3-par |
|---|---|---|---|---|---|---|
250 | 2262 | 1226 | 1057 | 3155 | 2531 | 2315 |
500 | 4625 | 2447 | 2019 | 6274 | 5040 | 4611 |
750 | 7030 | 3667 | 3133 | 9364 | 7542 | 6912 |
1000 | 9299 | 4888 | 4085 | 12,496 | 10,056 | 9211 |
2000 | 18379 | 9771 | 7846 | 25,027 | 20,106 | 18,400 |
4000 | 36,831 | 35,165 | 31,828 | 61,279 | – | – |
6000 | 55,950 | 52,743 | 47,335 | – | – | – |