Table 8 Running times (seconds) for different subset sizes of SARS-CoV2 (parallel implementations)
Size (MB) | Sacamats-par | Libsais-par | Big-bwt-par | DS1-par | DS2-par | DS3-par |
|---|---|---|---|---|---|---|
250 | 4.98 | 4.30 | 4.66 | 8.12 | 8.46 | 9.25 |
500 | 10.72 | 8.81 | 9.66 | 15.42 | 16.29 | 17.42 |
750 | 17.23 | 13.19 | 19.25 | 23.61 | 24.85 | 26.76 |
1000 | 24.67 | 17.77 | 25.96 | 33.31 | 34.03 | 36.08 |
2000 | 47.20 | 35.52 | 47.87 | 69.34 | 73.92 | 78.69 |
4000 | 110.64 | 98.22 | 94.50 | 205.25 | – | – |
6000 | 184.36 | 166.47 | 140.14 | – | – | – |