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Table 1 Overall performance of the tested methods

From: EMMA: a new method for computing multiple sequence alignments given a constraint subset alignment

Criterion

EMMA

WITCH-ng-add

MAFFT--add

MAFFT-linsi--add

Scalability

All

All

All but largest

\(\le 1000\) sequences

SPFN-random

1

2

3

1

SPFN-clade

2

3

4

1

Speed

2

2

1

3

  1. For scalability, we indicate which study datasets the method completed on
  2. For SPFN and speed, we indicate the relative position (1 is best, 2 is second best, etc.)
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Algorithms for Molecular Biology

ISSN: 1748-7188