Table 3 A comparison of the performance of long-read aligners using the 10H graph
| Â | PanAligner | Hybrid method | Minigraph | GraphAligner |
|---|---|---|---|---|
Indexing time (sec) | 96 | 136 | 66 | 238 |
Alignment time (sec) | 2924 | 605 | 50 | 4928 |
Memory usage (GB) | 23.14 | 24.68 | 23.18 | 23.10 |
Unaligned reads | 1.18% | 1.18% | 2.17% | 0% |
Incorrectly Aligned reads | 0.79% | 0.76% | 1.19% | 1.47% |
Unaligned reads (MQ\(\ge\)10) | 3.51% | 3.51% | 5.85% | 0.78% |
Incorrectly Aligned reads (MQ\(\ge\)10) | 0.20% | 0.17% | 0.32% | 0.91% |