Table 2 Summary of spanning and no-spanning distributions of gene-species mappings for the simulated dataset
From: Unifying duplication episode clustering and gene-species mapping inference
Dataset | Average | Subtree | No-subtree | Spanning | ||||
|---|---|---|---|---|---|---|---|---|
Species tree | p | number | Spanning | Spanning | Root | Root left child | Root right child | Other nodes |
of \(\bot\)’s | ||||||||
\(S_0\) | 0.1 | 215.43 | 179.87 | 35.56 | 32.31 | 105.39 | 42.04 | 0.13 |
\(S_0\) | 0.2 | 431.72 | 362.62 | 69.10 | 311.17 | 36.35 | 14.63 | 0.47 |
\(S_0\) | 0.3 | 647.30 | 547.66 | 99.64 | 540.35 | 4.40 | 2.03 | 0.88 |
\(S_0\) | 0.4 | 862.65 | 750.17 | 112.48 | 748.47 | 0.04 | 0.14 | 1.52 |
\(S_0\) | 0.5 | 1080.50 | 973.41 | 107.09 | 951.94 | 14.58 | 4.80 | 2.09 |
\(S_0\) | 0.6 | 1296.19 | 1206.18 | 90.01 | 1191.55 | 9.34 | 2.56 | 2.73 |
\(S_1\) | 0.1 | 243.81 | 198.68 | 45.13 | 30.74 | 117.40 | 50.29 | 0.25 |
\(S_1\) | 0.2 | 491.06 | 407.81 | 83.25 | 358.28 | 34.72 | 14.19 | 0.62 |
\(S_1\) | 0.3 | 729.12 | 624.81 | 104.31 | 611.53 | 9.14 | 3.59 | 0.55 |
\(S_1\) | 0.4 | 972.27 | 853.71 | 118.56 | 816.90 | 26.18 | 9.12 | 1.51 |
\(S_1\) | 0.5 | 1219.75 | 1104.48 | 115.27 | 1059.34 | 32.34 | 10.78 | 2.02 |
\(S_1\) | 0.6 | 1462.94 | 1363.53 | 99.41 | 1320.33 | 30.68 | 9.42 | 3.10 |
\(S_2\) | 0.1 | 356.48 | 305.48 | 51.00 | 166.29 | 114.21 | 24.39 | 0.59 |
\(S_2\) | 0.2 | 705.68 | 613.17 | 92.51 | 588.20 | 20.41 | 3.98 | 0.58 |
\(S_2\) | 0.3 | 1055.63 | 934.53 | 121.10 | 914.00 | 16.33 | 3.31 | 0.89 |
\(S_2\) | 0.4 | 1412.78 | 1268.31 | 144.47 | 1229.30 | 32.19 | 5.67 | 1.15 |
\(S_2\) | 0.5 | 1769.39 | 1620.15 | 149.24 | 1569.99 | 41.02 | 6.78 | 2.36 |
\(S_2\) | 0.6 | 2120.37 | 1976.13 | 144.24 | 1914.45 | 50.39 | 7.62 | 3.67 |
\(S_3\) | 0.1 | 416.78 | 367.52 | 49.26 | 365.73 | 0.27 | 1.48 | 0.04 |
\(S_3\) | 0.2 | 827.17 | 735.44 | 91.73 | 734.82 | 0.02 | 0.26 | 0.34 |
\(S_3\) | 0.3 | 1244.67 | 1095.73 | 148.94 | 1094.94 | 0.01 | 0.14 | 0.64 |
\(S_3\) | 0.4 | 1660.26 | 1490.09 | 170.17 | 1488.61 | 0.10 | 0.13 | 1.25 |
\(S_3\) | 0.5 | 2069.44 | 1872.54 | 196.90 | 1869.82 | 0.14 | 0.21 | 2.37 |
\(S_3\) | 0.6 | 2486.96 | 2316.49 | 170.47 | 2313.02 | 0.10 | 0.09 | 3.28 |
\(S_4\) | 0.1 | 633.11 | 603.36 | 29.75 | 546.99 | 50.66 | 5.40 | 0.31 |
\(S_4\) | 0.2 | 1267.87 | 1147.66 | 120.21 | 1135.46 | 10.60 | 1.29 | 0.31 |
\(S_4\) | 0.3 | 1888.89 | 1717.59 | 171.30 | 1700.55 | 14.95 | 1.61 | 0.48 |
\(S_4\) | 0.4 | 2530.90 | 2307.88 | 223.02 | 2100.00 | 188.21 | 17.67 | 2.00 |
\(S_4\) | 0.5 | 3162.44 | 2923.63 | 238.81 | 2834.49 | 79.56 | 7.12 | 2.46 |
\(S_4\) | 0.6 | 3786.53 | 3564.52 | 222.01 | 3386.89 | 160.26 | 13.52 | 3.85 |
\(S_5\) | 0.1 | 348.07 | 301.20 | 46.87 | 74.72 | 186.24 | 38.68 | 1.56 |
\(S_5\) | 0.2 | 698.21 | 615.30 | 82.91 | 582.68 | 26.10 | 6.01 | 0.51 |
\(S_5\) | 0.3 | 1047.30 | 924.45 | 122.85 | 923.35 | 0.03 | 0.31 | 0.76 |
\(S_5\) | 0.4 | 1395.93 | 1245.19 | 150.74 | 1218.45 | 21.38 | 3.87 | 1.49 |
\(S_5\) | 0.5 | 1748.75 | 1593.88 | 154.87 | 1527.58 | 54.01 | 10.12 | 2.17 |
\(S_5\) | 0.6 | 2100.72 | 1964.41 | 136.31 | 1941.82 | 16.87 | 2.77 | 2.95 |