Fig. 10
From: Recombinations, chains and caps: resolving problems with the DCJ-indel model
Modifications to the MRD for the ILP: Pseudo-caps and additional adjacency edges shown in grey, indel edges shown dashed. Numbers show the optimal variable assignment of the l-variable for each vertex. Arrows indicate the setting of a report variable of an edge together with the constraints responsible. Other report variables are 0. Due to C.04 all y-variables are 0 and consequently (C.05) all z variables are 0.