Table 2 Settings for \(U_f,L_f\) in Algorithm 1 to enforce different matching models described in [12] with \(f_\mathbb{A}\) and \(f_\mathbb{B}\) the markers of \(f\) in \(\mathbb{A}\) and \(\mathbb{B}\) respectively
From: Recombinations, chains and caps: resolving problems with the DCJ-indel model
Maximum matching (Full) | Intermediate matching | Exemplar matching | |
|---|---|---|---|
\(L_f\) | \(\min (|f_\mathbb{A}|,|f_\mathbb{B}|)\) | \(\min (|f_\mathbb{A}|,|f_\mathbb{B}|)\) | 1 |
\(U_f\) | \(\min (|f_\mathbb{A}|,|f_\mathbb{B}|)\) | 1 | 1 |