Table 1 We tabulate the results of the comparison between RNAFold and SparseRNAFolD-Standard when given only sequences with length \(>2500\) from our dataset as input and using the “exclusive dangle” model
From: SparseRNAfolD: optimized sparse RNA pseudoknot-free folding with dangle consideration
Run-time (s) | Memory: resident set size (KB) | |||
|---|---|---|---|---|
RNAFold | SparseRNAFolD | RNAFold | SparseRNAFolD | |
Minimum | 5.04 | 5.36 | 40,148 | 8832 |
Median | 7.28 | 7.86 | 51,284 | 12,592 |
Maximum | 22.08 | 18.32 | 109,040 | 16,836 |