Protein sequence and structure alignments within one framework

Table 1 Parameters optimized during clustering

Classification	n _disc	n _cont	n _total
sequence	20k	0	20k
structure	0	5k	5k
sequence + structure	20k	5k	25k

For the three types of classification and for fragments of length k, n_discis the number of adjustable parameters associated with discrete distributions, n_contthe number of adjustable parameters associated with continuous (multivariate Gaussian) distributions and n_totalthe total number of adjustable parameters.

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