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Table 3 Running time

From: A simulation study comparing supertree and combined analysis methods using SMIDGen

Num. Taxa Scaffold Factor Num. Scaff. Genes MRP wMRP Comb. Analysis
    MP ML MP ML MP ML
100 20% 1 0:02:26 (0:00:16) 0:04:12 (0:00:17) 0:01:59 (0:00:30) 7:00:43 (0:07:22) 0:00:19 0:09:22
   2 0:02:46 (0:00:18) 0:04:33 (0:00:17) 0:01:59 (0:00:29) 13:09:51 (0:08:19) 0:00:20 0:14:49
   4 0:02:46 (0:00:18) 0:04:48 (0:00:17) 0:02:02 (0:00:30) 13:12:03 (0:09:27) 0:00:22 0:24:19
  50% 1 0:02:31 (0:00:17) 0:04:52 (0:00:17) 0:02:02 (0:00:34) 13:27:05 (0:07:26) 0:00:20 0:19:28
   2 0:02:52 (0:00:17) 0:04:43 (0:00:17) 0:02:00 (0:00:29) 13:34:02 (0:08:30) 0:00:19 0:18:45
   4 0:02:36 (0:00:19) 0:04:47 (0:00:17) 0:02:03 (0:00:27) 13:29:32 (0:09:39) 0:00:21 0:11:47
  75% 1 0:02:34 (0:00:18) 0:04:40 (0:00:18) 0:02:10 (0:00:38) 13:37:31 (0:09:14) 0:00:20 0:11:22
   2 0:02:37 (0:00:21) 0:05:08 (0:00:19) 0:02:08 (0:00:31) 7:51:22 (0:04:47) 0:00:20 0:14:09
   4 0:02:39 (0:00:19) 0:05:25 (0:00:19) 0:02:12 (0:00:27) 16:08:55 (0:06:31) 0:00:22 0:17:46
  100% 1 0:03:12 (0:00:19) 0:04:49 (0:00:18) 0:02:15 (0:00:40) 16:04:16 (0:00:46) 0:00:19 0:15:59
   2 0:02:42 (0:00:19) 0:05:12 (0:00:18) 0:02:15 (0:00:31) 16:23:16 (0:00:32) 0:00:20 0:15:59
   4 0:02:51 (0:00:19) 0:05:24 (0:00:17) 0:02:27 (0:00:27) 14:12:23 (0:00:30) 0:00:21 0:16:42
500 20% 1 0:38:08 (0:14:00) 0:42:23 (0:10:30) 4:33:43 (4:11:26)   0:31:32 8:18:55
   2 0:36:41 (0:13:12) 0:54:00 (0:14:02) 4:16:10 (3:52:54)   0:30:03 8:11:45
   4 0:36:15 (0:12:38) 0:43:26 (0:10:26) 3:40:18 (3:16:18)   0:31:41 10:46:11
  50% 1 0:35:50 (0:12:57) 0:50:02 (0:11:11) 5:15:58 (4:54:09)   0:36:43 10:28:04
   2 1:04:27 (0:23:12) 0:53:11 (0:12:19) 5:16:34 (4:50:07)   0:33:17 11:11:52
   4 0:46:12 (0:15:36) 0:59:05 (0:13:42) 5:12:08 (4:42:06)   0:31:30 8:40:21
  75% 1 0:38:20 (0:13:45) 0:54:45 (0:12:56) 7:03:10 (6:40:10)   0:37:44 7:02:24
   2 0:37:54 (0:12:30) 0:52:09 (0:11:05) 6:34:58 (6:07:25)   0:34:19 7:53:34
   4 0:41:21 (0:12:39) 0:57:47 (0:11:43) 3:52:45 (3:18:24)   0:29:39 8:38:06
  100% 1 0:44:33 (0:15:07) 0:57:14 (0:11:53) 7:04:20 (6:43:18)   0:35:42 7:51:45
   2 0:44:38 (0:14:23) 1:09:41 (0:14:36) 12:33:24 (11:56:14)   0:37:26 7:59:34
   4 0:43:44 (0:12:02) 1:05:59 (0:11:38) 5:33:52 (4:55:00)   0:26:27 7:10:35
1000 20% 1 3:27:39 (2:21:39) 3:14:56 (1:47:23) 85:59:18 (84:53:20)   6:09:44 30:51:13
   2 3:22:14 (2:18:39) 3:26:56 (1:47:54) 30:34:14 (29:53:19)   5:46:56 28:05:57
   4 4:23:55 (3:05:25) 3:21:37 (1:51:27) 83:56:34 (82:42:34)   6:15:50 27:58:00
  50% 1 3:22:33 (2:18:18) 4:22:00 (2:18:23) 75:21:00 (74:11:14)   7:36:14 33:21:22
   2 3:36:43 (2:24:07) 3:28:32 (1:37:26) 54:19:41 (53:30:45)   6:14:55 29:23:03
   4 3:15:25 (2:01:12) 4:06:33 (2:00:27) 41:23:37 (40:19:38)   11:13:18 29:28:29
  75% 1 4:12:25 (2:38:59) 4:18:28 (1:58:46) 88:13:11 (87:10:11)   8:07:53 33:39:42
   2 4:01:05 (2:24:18) 4:22:16 (2:00:57) 67:17:02 (66:12:47)   6:16:32 28:41:11
   4 4:11:41 (2:22:43) 4:34:12 (1:40:56) 50:49:52 (49:25:52)   5:33:09 29:08:11
  100% 1 5:29:37 (3:26:03) 4:29:46 (1:52:53) 174:47:23 (173:41:33)   7:56:46 34:14:48
   2 4:26:05 (2:39:56) 5:53:10 (2:30:23) 295:10:35 (293:51:27)   6:02:16 27:11:45
   4 4:54:31 (2:43:09) 4:43:11 (1:51:43) 174:52:35 (172:49:10)   4:49:07 24:33:39
  1. Average running time for each of the six methods. For the four supertree methods, the time to compute just the supertree is given in parentheses following the full running time, which includes the time taken to compute source trees. Running times are given in hours:minutes:seconds.