Table 3 Running time
From: A simulation study comparing supertree and combined analysis methods using SMIDGen
Num. Taxa | Scaffold Factor | Num. Scaff. Genes | MRP | wMRP | Comb. Analysis | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
MP | ML | MP | ML | MP | ML | |||||||
100 | 20% | 1 | 0:02:26 (0:00:16) | 0:04:12 (0:00:17) | 0:01:59 (0:00:30) | 7:00:43 (0:07:22) | 0:00:19 | 0:09:22 | ||||
2 | 0:02:46 (0:00:18) | 0:04:33 (0:00:17) | 0:01:59 (0:00:29) | 13:09:51 (0:08:19) | 0:00:20 | 0:14:49 | ||||||
4 | 0:02:46 (0:00:18) | 0:04:48 (0:00:17) | 0:02:02 (0:00:30) | 13:12:03 (0:09:27) | 0:00:22 | 0:24:19 | ||||||
50% | 1 | 0:02:31 (0:00:17) | 0:04:52 (0:00:17) | 0:02:02 (0:00:34) | 13:27:05 (0:07:26) | 0:00:20 | 0:19:28 | |||||
2 | 0:02:52 (0:00:17) | 0:04:43 (0:00:17) | 0:02:00 (0:00:29) | 13:34:02 (0:08:30) | 0:00:19 | 0:18:45 | ||||||
4 | 0:02:36 (0:00:19) | 0:04:47 (0:00:17) | 0:02:03 (0:00:27) | 13:29:32 (0:09:39) | 0:00:21 | 0:11:47 | ||||||
75% | 1 | 0:02:34 (0:00:18) | 0:04:40 (0:00:18) | 0:02:10 (0:00:38) | 13:37:31 (0:09:14) | 0:00:20 | 0:11:22 | |||||
2 | 0:02:37 (0:00:21) | 0:05:08 (0:00:19) | 0:02:08 (0:00:31) | 7:51:22 (0:04:47) | 0:00:20 | 0:14:09 | ||||||
4 | 0:02:39 (0:00:19) | 0:05:25 (0:00:19) | 0:02:12 (0:00:27) | 16:08:55 (0:06:31) | 0:00:22 | 0:17:46 | ||||||
100% | 1 | 0:03:12 (0:00:19) | 0:04:49 (0:00:18) | 0:02:15 (0:00:40) | 16:04:16 (0:00:46) | 0:00:19 | 0:15:59 | |||||
2 | 0:02:42 (0:00:19) | 0:05:12 (0:00:18) | 0:02:15 (0:00:31) | 16:23:16 (0:00:32) | 0:00:20 | 0:15:59 | ||||||
4 | 0:02:51 (0:00:19) | 0:05:24 (0:00:17) | 0:02:27 (0:00:27) | 14:12:23 (0:00:30) | 0:00:21 | 0:16:42 | ||||||
500 | 20% | 1 | 0:38:08 (0:14:00) | 0:42:23 (0:10:30) | 4:33:43 (4:11:26) | 0:31:32 | 8:18:55 | |||||
2 | 0:36:41 (0:13:12) | 0:54:00 (0:14:02) | 4:16:10 (3:52:54) | 0:30:03 | 8:11:45 | |||||||
4 | 0:36:15 (0:12:38) | 0:43:26 (0:10:26) | 3:40:18 (3:16:18) | 0:31:41 | 10:46:11 | |||||||
50% | 1 | 0:35:50 (0:12:57) | 0:50:02 (0:11:11) | 5:15:58 (4:54:09) | 0:36:43 | 10:28:04 | ||||||
2 | 1:04:27 (0:23:12) | 0:53:11 (0:12:19) | 5:16:34 (4:50:07) | 0:33:17 | 11:11:52 | |||||||
4 | 0:46:12 (0:15:36) | 0:59:05 (0:13:42) | 5:12:08 (4:42:06) | 0:31:30 | 8:40:21 | |||||||
75% | 1 | 0:38:20 (0:13:45) | 0:54:45 (0:12:56) | 7:03:10 (6:40:10) | 0:37:44 | 7:02:24 | ||||||
2 | 0:37:54 (0:12:30) | 0:52:09 (0:11:05) | 6:34:58 (6:07:25) | 0:34:19 | 7:53:34 | |||||||
4 | 0:41:21 (0:12:39) | 0:57:47 (0:11:43) | 3:52:45 (3:18:24) | 0:29:39 | 8:38:06 | |||||||
100% | 1 | 0:44:33 (0:15:07) | 0:57:14 (0:11:53) | 7:04:20 (6:43:18) | 0:35:42 | 7:51:45 | ||||||
2 | 0:44:38 (0:14:23) | 1:09:41 (0:14:36) | 12:33:24 (11:56:14) | 0:37:26 | 7:59:34 | |||||||
4 | 0:43:44 (0:12:02) | 1:05:59 (0:11:38) | 5:33:52 (4:55:00) | 0:26:27 | 7:10:35 | |||||||
1000 | 20% | 1 | 3:27:39 (2:21:39) | 3:14:56 (1:47:23) | 85:59:18 (84:53:20) | 6:09:44 | 30:51:13 | |||||
2 | 3:22:14 (2:18:39) | 3:26:56 (1:47:54) | 30:34:14 (29:53:19) | 5:46:56 | 28:05:57 | |||||||
4 | 4:23:55 (3:05:25) | 3:21:37 (1:51:27) | 83:56:34 (82:42:34) | 6:15:50 | 27:58:00 | |||||||
50% | 1 | 3:22:33 (2:18:18) | 4:22:00 (2:18:23) | 75:21:00 (74:11:14) | 7:36:14 | 33:21:22 | ||||||
2 | 3:36:43 (2:24:07) | 3:28:32 (1:37:26) | 54:19:41 (53:30:45) | 6:14:55 | 29:23:03 | |||||||
4 | 3:15:25 (2:01:12) | 4:06:33 (2:00:27) | 41:23:37 (40:19:38) | 11:13:18 | 29:28:29 | |||||||
75% | 1 | 4:12:25 (2:38:59) | 4:18:28 (1:58:46) | 88:13:11 (87:10:11) | 8:07:53 | 33:39:42 | ||||||
2 | 4:01:05 (2:24:18) | 4:22:16 (2:00:57) | 67:17:02 (66:12:47) | 6:16:32 | 28:41:11 | |||||||
4 | 4:11:41 (2:22:43) | 4:34:12 (1:40:56) | 50:49:52 (49:25:52) | 5:33:09 | 29:08:11 | |||||||
100% | 1 | 5:29:37 (3:26:03) | 4:29:46 (1:52:53) | 174:47:23 (173:41:33) | 7:56:46 | 34:14:48 | ||||||
2 | 4:26:05 (2:39:56) | 5:53:10 (2:30:23) | 295:10:35 (293:51:27) | 6:02:16 | 27:11:45 | |||||||
4 | 4:54:31 (2:43:09) | 4:43:11 (1:51:43) | 174:52:35 (172:49:10) | 4:49:07 | 24:33:39 | |||||||