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Table 2 Minimal semi-positive P-invariant computation on bigger models of biochemical reaction networks

From: Invariants and Other Structural Properties of Biochemical Models as a Constraint Satisfaction Problem

Model

transit.

places

P-invar.

time (s)

Invariant size

Schoeberl's MAPK [8]

125

105

13

0.53

from 2 to 44

Calzone et al. E2F/Rb [31]

~500

~400

79

18

from size 1 (EP300) to about 230 (E2F1 box)

Kohn's map [32]

~800

~500

70

171

from size 1 (Myt1) to about 200 (pRb or cdk2)

  1. Minimal semi-positive P-invariant computation on bigger models of biochemical reaction networks