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  1. Given a set S of n locally aligned sequences, it is a needed prerequisite to partition it into groups of very similar sequences to facilitate subsequent computations, such as the generation of a phylogenetic tree...

    Authors: Katharina A Lehmann, Michael Kaufmann, Stephan Steigele and Kay Nieselt

    Citation: Algorithms for Molecular Biology 2006 1:9

    Content type: Research

    Published on:

  2. Recently, we performed an assessment of 13 popular computational tools for discovery of transcription factor binding sites (M. Tompa, N. Li, et al., "Assessing Computational Tools for the Discovery of Transcri...

    Authors: Nan Li and Martin Tompa

    Citation: Algorithms for Molecular Biology 2006 1:8

    Content type: Research

    Published on:

  3. Most cellular processes are carried out by multi-protein complexes, groups of proteins that bind together to perform a specific task. Some proteins form stable complexes, while other proteins form transient as...

    Authors: Elena Zotenko, Katia S Guimarães, Raja Jothi and Teresa M Przytycka

    Citation: Algorithms for Molecular Biology 2006 1:7

    Content type: Research

    Published on:

  4. Automated software tools for multiple alignment often fail to produce biologically meaningful results. In such situations, expert knowledge can help to improve the quality of alignments.

    Authors: Burkhard Morgenstern, Sonja J Prohaska, Dirk Pöhler and Peter F Stadler

    Citation: Algorithms for Molecular Biology 2006 1:6

    Content type: Research

    Published on:

  5. Motif patterns of maximal saturation emerged originally in contexts of pattern discovery in biomolecular sequences and have recently proven a valuable notion also in the design of data compression schemes. Inf...

    Authors: Alberto Apostolico, Matteo Comin and Laxmi Parida

    Citation: Algorithms for Molecular Biology 2006 1:4

    Content type: Research

    Published on:

  6. RNA has been recognized as a key player in cellular regulation in recent years. In many cases, non-coding RNAs exert their function by binding to other nucleic acids, as in the case of microRNAs and snoRNAs. T...

    Authors: Stephan H Bernhart, Hakim Tafer, Ulrike Mückstein, Christoph Flamm, Peter F Stadler and Ivo L Hofacker

    Citation: Algorithms for Molecular Biology 2006 1:3

    Content type: Research

    Published on:

  7. This editorial announces Algorithms for Molecular Biology, a new online open access journal published by BioMed Central. By launching the first open access journal on algorithmic bioinformatics, we provide a foru...

    Authors: Burkhard Morgenstern and Peter F Stadler

    Citation: Algorithms for Molecular Biology 2006 1:1

    Content type: Editorial

    Published on: